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DNA Dizilemenin Tarihsel Gelişimi

Year 2017, Volume: 6 Issue: 2, 47 - 53, 31.08.2017

Mehmet Zeki Kızmaz İsmail Can Paylan Semih Erkan

Abstract

Nükleik asit dizi analizi, çok çeşitli araştırma
uygulamalarının ayrılmaz bir bileşenidir. Son 50 yıl boyunca araştırıcıların
çoğu DNA ve RNA moleküllerinin dizi analizlerini gerçekleştiren teknik ve
teknolojilerin üretilmesi için çaba harcamıştır. Bu süreçte küçük boyutlu
moleküllerin dizilenmesinden tüm genomun dizilenmesine kadar uzanan çok büyük
gelişmeler olmuştur. Bu makalede belirtilen zaman aralığında DNA dizilemenin
temelini oluşturan önemli gelişmeler, dizilemede kullanılan tekniklerin ve
teknolojilerin ortaya çıkışı ve gelişmeleri açıklanmaktadır.

Keywords

DNA dizileme Yeni nesil dizileme DNA dizilemenin tarihçesi

References

  • Adams, M.D., Kelley, J.M., Gocayne, J.D., et al., 1991. Complementary DNA Sequencing: Expressed Sequence Tags and Human Genome Project. Science. 252 (5013), 1651-1656.
  • Baltimore, D., 1970. Viral RNA-dependent DNA Polymerase: RNA-dependent DNA Polymerase in Virions of RNA Tumour Viruses. Nature. 226 (5252), 1209-1211.
  • Barba, M., Czosnek, H., Hadidi, A., 2014. Historical Perspective, Development and Applications of Next-Generation Sequencing in Plant Virology. Viruses. 6 (1), 106-136.
  • Fleischmann, R.D., Adams, M.D., White, O., et al., 1995. Whole-Genome Random Sequencing and Assembly of Haemophilus influenzae Rd. Science. 269 (5223), 496-512.
  • Franca, L.T.C., Carrilho, E., Kist, T.B., 2002. A review of DNA Sequencing Techniques. Quarterly Reviews of Biophysics. 35 (2), 169-200.
  • Fraser, C.M., Gocayne, J.D., White, O., et al, 1995. The Minimal Gene Complement of Mycoplasma genitalium. Science. 270 (5235), 397-404.
  • Guzvic, M., 2013. The History of DNA Sequencing. Journal of Medical Biochemistry. 32 (4), 301-312.
  • Heather, J.M., Chain, B., 2016. The Sequence of Sequencers: The History of Sequencing DNA. Genomics. 107 (1), 1-8.
  • Holley, R.W., Everett, G.A., Madison, J.T., Zamir, A., 1965. Nucleotide Sequences in the Yeast Alanine Transfer Ribonucleic Acid. The Journal of Biological Chemistry, 240 (5), 2122-2128.
  • IHGSC, 2001. International Human Genome Sequencing Consortium: Initial Sequencing and Analysis of the Human Genome. Nature. 409 (6822), 860-921.
  • Illumina, 2017. History of Illumina Sequencing. İnternet erişim: [https://www.illumina.com/technology/next-generation-sequencing/solexa-technology.html] Erişim tarihi: 17.03.2017.
  • Ion-Torrent, 2017. Ion Torrent Next-Generation Sequencing Workflow. İnternet erişim: [http://www.thermofisher.com/tr/en/home/life-science/sequencing/next-generation-sequencing/ion-torrent-next-generation-sequencing-workflow.html] Erişim tarihi: 17.03.2017.
  • Kiechle, F.L., Zhang, X., 2002. The Postgenomic Era: Implications for the Clinical Laboratory. Archives of Pathology & Laboratory Medicine. 126 (3), 255-262.
  • Maxam, A.M., Gilbert, W.A., 1977. A New Method for Sequencing DNA. Proceedings of the National Academy of Sciences. 74 (2), 560-564.
  • Kulski, J.K., Kenworthy, W., Bellgard, M., et al., 2005. Gene Expression Profiling of Japanese Psoriatic Skin Reveals an Increased Activity in Molecular Stress and Immune Response Signals. Journal of Molecular Medicine. 83 (12), 964-975.
  • Lenoir, T., Giannella, E., 2006. Case Study: The Emergence and Diffusion of DNA Microarray Technology. Journal of Biomedical Discovery and Collaboration. 1 (11), 39p.
  • Life Sciences, 2007. a Roche Company. İnternet erişim: [http://www.roche.com/investors/updates/inv-update-2007-03-29.html] Erişim tarihi: 17.03.2017.
  • Maxam, A.M., Gilbert, W.A., 1977. New Method for Sequencing DNA. Proceedings of the National Academy of Sciences. 74 (2), 560-564.
  • Nanopore, 2017. Oxford Nanopore Technologies. İnternet erişim: [https://www.nanoporetech.com/] Erişim tarihi: 17.03.2017.
  • NHGRI, 2016. The Cost of Sequencing a Human Genome. İnternet erişim: [https://www.genome.gov/sequencingcosts] Erişim tarihi: 17.03.2017.
  • PacBio, 2017. Pacific Biosciences. İnternet erişim: [http://www.pacb.com/] Erişim tarihi: 17.07.2017.
  • Peltonen, L., McKusick, V.A., 2001. Dissecting Human Disease in the Postgenomic Era. Science. 291 (5507), 1224-1229.
  • RajBhandary, U.L., Kohrer, C., 2006. Early Days of tRNA Research: Discovery, Function, Purification and Sequence Analysis. Journal of Biosciences. 31 (4), 439-451.
  • Saiki, R.K., Scharf, S., Faloona, F., et al., 1985. Enzymatic Amplification of Beta-globin Genomic Sequences and Restriction Site Analysis for Diagnosis of Sickle Cell Anemia. Science. 230 (4732), 1350-1354.
  • Sanger, F., Nicklen, S., Coulsen, A.R., 1977b. DNA Sequencing with Chain-terminator İnhibitors. Proceedings of the National Academy of Sciences. 74 (12), 5463-5467.
  • Smith, L.M., Sanders, J.Z., Kaiser, R.J., Hughes, P., Dodd, C., Connell, C.R., Heiner, C., Kent, S.B., Hood, L.E., 1986. Fluorescence Detection in Automated DNA Sequence Analysis. Nature, 321 (6071), 674-679.
  • Stein, L., 2001. Genome annotation: from Sequence to Biology. Nature Reviews Genetics. 2 (7), 493-503.
  • SOLID, 2017. SOLiD® Next-Generation Sequencing. İnternet erişim: [https://www.thermofisher.com/tr/en/ home/life-science/sequencing/next-generation-sequencing/solid-next-generation-sequencing.html] Erişim tarihi: 17.03.2017.
  • Temin, H.M., Mizutani, S., 1970. RNA-dependent DNA Polymerase in Virions of Rous sarcoma virus. Nature. 226 (5252), 1211-1213.
  • Venter, J.C., Adams, M.D., Myers, E.W., et al., 2001. The Sequence of the Human Genome. Science. 291 (5507), 1304-1351.
  • Zhu, T., 2003. Global Analysis of Gene Expression Using Gene Chip Microarrays. Current Opinion in Plant Biology. 6 (5), 418-425.

Year 2017, Volume: 6 Issue: 2, 47 - 53, 31.08.2017

Mehmet Zeki Kızmaz İsmail Can Paylan Semih Erkan

Abstract

References

  • Adams, M.D., Kelley, J.M., Gocayne, J.D., et al., 1991. Complementary DNA Sequencing: Expressed Sequence Tags and Human Genome Project. Science. 252 (5013), 1651-1656.
  • Baltimore, D., 1970. Viral RNA-dependent DNA Polymerase: RNA-dependent DNA Polymerase in Virions of RNA Tumour Viruses. Nature. 226 (5252), 1209-1211.
  • Barba, M., Czosnek, H., Hadidi, A., 2014. Historical Perspective, Development and Applications of Next-Generation Sequencing in Plant Virology. Viruses. 6 (1), 106-136.
  • Fleischmann, R.D., Adams, M.D., White, O., et al., 1995. Whole-Genome Random Sequencing and Assembly of Haemophilus influenzae Rd. Science. 269 (5223), 496-512.
  • Franca, L.T.C., Carrilho, E., Kist, T.B., 2002. A review of DNA Sequencing Techniques. Quarterly Reviews of Biophysics. 35 (2), 169-200.
  • Fraser, C.M., Gocayne, J.D., White, O., et al, 1995. The Minimal Gene Complement of Mycoplasma genitalium. Science. 270 (5235), 397-404.
  • Guzvic, M., 2013. The History of DNA Sequencing. Journal of Medical Biochemistry. 32 (4), 301-312.
  • Heather, J.M., Chain, B., 2016. The Sequence of Sequencers: The History of Sequencing DNA. Genomics. 107 (1), 1-8.
  • Holley, R.W., Everett, G.A., Madison, J.T., Zamir, A., 1965. Nucleotide Sequences in the Yeast Alanine Transfer Ribonucleic Acid. The Journal of Biological Chemistry, 240 (5), 2122-2128.
  • IHGSC, 2001. International Human Genome Sequencing Consortium: Initial Sequencing and Analysis of the Human Genome. Nature. 409 (6822), 860-921.
  • Illumina, 2017. History of Illumina Sequencing. İnternet erişim: [https://www.illumina.com/technology/next-generation-sequencing/solexa-technology.html] Erişim tarihi: 17.03.2017.
  • Ion-Torrent, 2017. Ion Torrent Next-Generation Sequencing Workflow. İnternet erişim: [http://www.thermofisher.com/tr/en/home/life-science/sequencing/next-generation-sequencing/ion-torrent-next-generation-sequencing-workflow.html] Erişim tarihi: 17.03.2017.
  • Kiechle, F.L., Zhang, X., 2002. The Postgenomic Era: Implications for the Clinical Laboratory. Archives of Pathology & Laboratory Medicine. 126 (3), 255-262.
  • Maxam, A.M., Gilbert, W.A., 1977. A New Method for Sequencing DNA. Proceedings of the National Academy of Sciences. 74 (2), 560-564.
  • Kulski, J.K., Kenworthy, W., Bellgard, M., et al., 2005. Gene Expression Profiling of Japanese Psoriatic Skin Reveals an Increased Activity in Molecular Stress and Immune Response Signals. Journal of Molecular Medicine. 83 (12), 964-975.
  • Lenoir, T., Giannella, E., 2006. Case Study: The Emergence and Diffusion of DNA Microarray Technology. Journal of Biomedical Discovery and Collaboration. 1 (11), 39p.
  • Life Sciences, 2007. a Roche Company. İnternet erişim: [http://www.roche.com/investors/updates/inv-update-2007-03-29.html] Erişim tarihi: 17.03.2017.
  • Maxam, A.M., Gilbert, W.A., 1977. New Method for Sequencing DNA. Proceedings of the National Academy of Sciences. 74 (2), 560-564.
  • Nanopore, 2017. Oxford Nanopore Technologies. İnternet erişim: [https://www.nanoporetech.com/] Erişim tarihi: 17.03.2017.
  • NHGRI, 2016. The Cost of Sequencing a Human Genome. İnternet erişim: [https://www.genome.gov/sequencingcosts] Erişim tarihi: 17.03.2017.
  • PacBio, 2017. Pacific Biosciences. İnternet erişim: [http://www.pacb.com/] Erişim tarihi: 17.07.2017.
  • Peltonen, L., McKusick, V.A., 2001. Dissecting Human Disease in the Postgenomic Era. Science. 291 (5507), 1224-1229.
  • RajBhandary, U.L., Kohrer, C., 2006. Early Days of tRNA Research: Discovery, Function, Purification and Sequence Analysis. Journal of Biosciences. 31 (4), 439-451.
  • Saiki, R.K., Scharf, S., Faloona, F., et al., 1985. Enzymatic Amplification of Beta-globin Genomic Sequences and Restriction Site Analysis for Diagnosis of Sickle Cell Anemia. Science. 230 (4732), 1350-1354.
  • Sanger, F., Nicklen, S., Coulsen, A.R., 1977b. DNA Sequencing with Chain-terminator İnhibitors. Proceedings of the National Academy of Sciences. 74 (12), 5463-5467.
  • Smith, L.M., Sanders, J.Z., Kaiser, R.J., Hughes, P., Dodd, C., Connell, C.R., Heiner, C., Kent, S.B., Hood, L.E., 1986. Fluorescence Detection in Automated DNA Sequence Analysis. Nature, 321 (6071), 674-679.
  • Stein, L., 2001. Genome annotation: from Sequence to Biology. Nature Reviews Genetics. 2 (7), 493-503.
  • SOLID, 2017. SOLiD® Next-Generation Sequencing. İnternet erişim: [https://www.thermofisher.com/tr/en/ home/life-science/sequencing/next-generation-sequencing/solid-next-generation-sequencing.html] Erişim tarihi: 17.03.2017.
  • Temin, H.M., Mizutani, S., 1970. RNA-dependent DNA Polymerase in Virions of Rous sarcoma virus. Nature. 226 (5252), 1211-1213.
  • Venter, J.C., Adams, M.D., Myers, E.W., et al., 2001. The Sequence of the Human Genome. Science. 291 (5507), 1304-1351.
  • Zhu, T., 2003. Global Analysis of Gene Expression Using Gene Chip Microarrays. Current Opinion in Plant Biology. 6 (5), 418-425.
There are 31 citations in total.

Details

Journal Section Derleme Makaleler
Authors

Mehmet Zeki Kızmaz

İsmail Can Paylan

Semih Erkan

Publication Date August 31, 2017
Published in Issue Year 2017 Volume: 6 Issue: 2

Cite

APA Kızmaz, M. Z., Paylan, İ. C., & Erkan, S. (2017). DNA Dizilemenin Tarihsel Gelişimi. Gaziosmanpaşa Bilimsel Araştırma Dergisi, 6(2), 47-53.
AMA Kızmaz MZ, Paylan İC, Erkan S. DNA Dizilemenin Tarihsel Gelişimi. GBAD. August 2017;6(2):47-53.
Chicago Kızmaz, Mehmet Zeki, İsmail Can Paylan, and Semih Erkan. “DNA Dizilemenin Tarihsel Gelişimi”. Gaziosmanpaşa Bilimsel Araştırma Dergisi 6, no. 2 (August 2017): 47-53.
EndNote Kızmaz MZ, Paylan İC, Erkan S (August 1, 2017) DNA Dizilemenin Tarihsel Gelişimi. Gaziosmanpaşa Bilimsel Araştırma Dergisi 6 2 47–53.
IEEE M. Z. Kızmaz, İ. C. Paylan, and S. Erkan, “DNA Dizilemenin Tarihsel Gelişimi”, GBAD, vol. 6, no. 2, pp. 47–53, 2017.
ISNAD Kızmaz, Mehmet Zeki et al. “DNA Dizilemenin Tarihsel Gelişimi”. Gaziosmanpaşa Bilimsel Araştırma Dergisi 6/2 (August 2017), 47-53.
JAMA Kızmaz MZ, Paylan İC, Erkan S. DNA Dizilemenin Tarihsel Gelişimi. GBAD. 2017;6:47–53.
MLA Kızmaz, Mehmet Zeki et al. “DNA Dizilemenin Tarihsel Gelişimi”. Gaziosmanpaşa Bilimsel Araştırma Dergisi, vol. 6, no. 2, 2017, pp. 47-53.
Vancouver Kızmaz MZ, Paylan İC, Erkan S. DNA Dizilemenin Tarihsel Gelişimi. GBAD. 2017;6(2):47-53.