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Rhodocybe fumanellii (Entolomataceae)’nin Türkiye'deki İlk Kaydı ve Morfolojik-Moleküler Analizi

Yıl 2025, Cilt: 28 Sayı: 5, 1197 - 1205

Gülce Ediş , Eda Kumru , İsmail Acar , Halide Karabıyık , Ilgaz Akata

https://doi.org/10.18016/ksutarimdoga.vi.1703181

Öz

Çalışma, Türkiye'nin kuzeybatısındaki Çanakkale ilinden toplanan mantar örneklerinin kapsamlı bir taksonomik değerlendirmesini sunmaktadır. Ayrıntılı makro ve mikromorfolojik analizler ile nükleer ribozomal DNA'nın iç transkripsiyonlu spacer (nrITS, rDNA) bölgesine dayanan moleküler filogenetik yöntemleri birleştiren bütünleştirici bir yaklaşım kullanılmıştır. Sonuçlar, örneklerin Rhodocybe fumanellii R.J. Ferrari, Vizzini & Fellin olarak kimliğini doğrulamış ve bu türün Türkiye'deki ilk kaydını temsil etmiştir. Rufobrunnea bölümünün yeni belgelenmiş bir üyesi olarak bu bulgu, türün bilinen coğrafi dağılımını genişletmekte ve bölgedeki Rhodocybe cinsinin anlaşılmasına katkıda bulunmaktadır. Çalışma, kapsamlı morfolojik tanımları, ekolojik verileri, coğrafi koordinatlarla birlikte kesin lokalite bilgilerini, toplama detaylarını ve fotoğrafik dokümantasyonu içermekte ve böylece Türkiye'deki mantar biyoçeşitliliği bilgisini zenginleştirmektedir.

Anahtar Kelimeler

Rhodocybe fumanelli Türkiye Yeni kayıt Mikobiyota

Kaynakça

  • Akata, I. & Erdoğdu, M. (2020). First report of Rutstroemia elatina (Ascomycota) from Turkey. Kahramanmaraş Sütçü İmam University Journal of Agriculture and Nature 23 (2), 391-395. https://doi.org/10.18016/ksutarimdoga.vi.626466
  • Akata, I., Ediş, G., Kumru, E., Acar, İ., & Şahin, E. (2024a). Taxonomic Studies on Rhodocybe asyae Specimens Discovered in a New Location. Kahramanmaraş Sütçü İmam University Journal of Agriculture and Nature 27 (Suppl 1), 124-132. https://doi.org/10.18016/ksutarimdoga.vi.1507554
  • Akata, I., Kumru, E., Sahin, E., Acar, İ., & Kaya, E. (2024b). Amanita vidua: A new record for Turkish Amanita Section Phalloideae based on morphological and molecular data. Trakya University Journal of Natural Sciences, 25(1), 97-110. https://doi.org/10.23902/trkjnat.1446327
  • Akata, I., Ediş, G., Kumru, E., Acar, İ., & Şahin, E. (2024c). Initial Report of Inocybe costinitii in Türkiye with Morphological and Molecular Data. Kahramanmaraş Sütçü İmam University Journal of Agriculture and Nature 27 (6), 1304-1312. https://doi.org/10.18016/ksutarimdoga.vi.1467628
  • Akata, I., Kumru, E., Ediş, G., Acar, İ., & Sahin, E. (2024d). Two Newly Reported Agaricales Species from Türkiye with Morphological and Molecular Data. Kastamonu University Journal of Forestry Faculty, 24(3), 260-280. https://doi.org/10.17475/kastorman.1599952
  • Akata, I., Kumru, E., Ediş, G., Özbey, B. G., Acar, İ., & Sahin, E. (2025). Morphological and Molecular Characterization of Terfezia claveryi and its Distribution in Türkiye. Kahramanmaraş Sütçü İmam University Journal of Agriculture and Nature, 28(3), 843-854. https://doi.org/10.18016/ksutarimdoga.vi.1622161
  • Aplin, N., Cullington, P., Douglas, B., & Janke, E. (2022). DNA barcoding reveals three Rhodocybe species new to Britain. Field Mycology, 23(2), 41-47.
  • Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G., Barber, P. A. Alvarado, P., Barnes, C. W., Buchanan, P. K., Heykoop, M., Moreno, G., Thangavel, R., Van der spuy, S., Barili, A., Barrett, S., Cacciola, S.O., Cano-Lira, J.F., Crane, C., Decock, C., Gibertoni, T.B., Guarro, J., Guevara-Suarez, M., Hubka, V., Kolařík, M., Lira, C.R.S., ...................................... Groenewald, J.Z. (2017). Fungal Planet description sheets: 558–624. Persoonia: Molecular Phylogeny and Evolution of Fungi, 38, 240. https://doi.org/10.3767/003158517X698941
  • Dutta, A. K., Gates, G. M., Rakshit, S., & Acharya, K. (2021). Rhodocybe brunneoaurantiaca (sect. Rufrobrunnea, Entolomataceae): a new species from India. Nordic Journal of Botany, 39(6). https://doi.org/10.1111/njb.03061
  • Kaygusuz, O. (2024). Rhodocybe asanii (Entolomataceae: Agaricales), Türkiye için yeni bir lokalite kaydı. 2nd International Conference on Trends in Advanced Research (ICTAR 2024), Konya, Türkiye, November 22-23, 2024, pp. 707-712.
  • Kluting K. L., Baroni T. J., & Bergemann S. E. (2014). Toward a stable classification of genera within the Entolomataceae: a phylogenetic re-evaluation of the Rhodocybe-Clitopilus clade. Mycologia 106(6), 1127-1142. https://doi.org/10.3852/13-270
  • Lücking, R., Aime, M. C., Robbertse, B., Miller, A. N., Aoki, T. Ariyawansa, H. A., Cardinali, G., Crous, P. W., Druzhinina, I. S., Geiser, D. M., Hawksworth, D. L., Hyde, K. D., Irinyi, L., Jeewon, R., Johnston, P. R., Kirk, P. M., Malosso, E., May, T. W., Meyer, W., Nilsson, H.R., Öpik, M., Robert, V., Stadler, M., Thines, M., Vu, D., Yurkov, A.M., Zhang, N., & Schoch, C.L. (2021). Fungal taxonomy and sequence-based nomenclature. Nature Microbiology, 6(5), 540-548. https://doi.org/10.1038/s41564-021-00888-x
  • Raja, H. A., Miller, A. N., Pearce, C. J., & Oberlies, N. H. (2017). Fungal identification using molecular tools: a primer for the natural products research community. Journal of natural products, 80(3), 756-770. https://doi.org/10.1021/acs.jnatprod.6b01085
  • Reschke, K., Noordeloos, M. E., Manz, C., Hofmann, T. A., Rodríguez-Cedeño, J., Dima, B., & Piepenbring, M. (2022). Fungal diversity in the tropics: Entoloma spp. in Panama. Mycological progress, 21(1), 93-145. https://doi.org/10.1007/s11557-021-01752-2
  • Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, V., Spouge, J. L., Levesque, C. A., Chen, W., Bolchacova, K., ……………………………………….. , D. Schindel, D. 2012. “Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi”, Proceedings of the national academy of Sciences, 109(16), 6241-6246.. https://doi.org/10.1073/pnas.1117018109
  • Schoch, C. L., Robbertse, B., Robert, V., Vu, D., Cardinali, G., Irinyi, L., Meyer, W., Nilsson, R. H., Hughes, K., …………………………………………………….. Federhen, S. (2014). Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database, bau061. https://doi.org/10.1093/database/bau061
  • Sesli, E. (2021). Rhodocybe cistetorum (Basidiomycota, Entolomataceae), a new species from the Colchic ecoregion of Turkey. Nordic Journal of Botany, 39(4). https://doi.org/10.1111/njb.03078
  • Sesli, E. & Vizzini, A. (2017). Two new Rhodocybe species (sect. Rufobrunnea, Entolomataceae) from the east black sea coast of Turkey. Turkish Journal of Botany, 41(2), 200-210. https://doi.org/10.3906/bot-1607-1
  • Silva-Filho, A. G., Baroni, T. J., Komura, D. L., Moncalvo, J. M., Baseia, I. G., & Wartchow, F. (2020). Rhodocybe fusipes (Entolomataceae), a new species from Amazonian ‘terra-firme’forest of Brazil. Sydowia, 72, 163-170. http://doi.org/10.12905/0380.sydowia72-2020-0163
  • Sleiman, S., Bellanger, J. M., Richard, F., & Stephan, J. (2021). First molecular-based contribution to the checklist of Lebanon macrofungi. Mycotaxon, 136(3), 687-687. https://doi.org/10.5248/136.687
  • Sun, Y. L. & Bau, T. (2023). Rhodocybe subasyae, a new species of Rhodocybe sect. Rufobrunnea (Entolomataceae, Agaricales) from northeast China. Mycoscience, 64(3), 96-100. https://doi.org/10.47371/mycosci.2023.03.001
  • Tamura, K. (1992). Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases. Molecular Biology and Evolution, 9(4), 678-687. https://doi.org/10.1093/oxfordjournals.molbev.a040752
  • Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution, 38(7), 3022-3027. https://doi.org/10.1093/molbev/msab120
  • Vizzini, A., Baroni T. J., Sesli, E., Antonín, V., & Saar, I. (2016). Rhodocybe tugrulii (Agaricales, Entolomataceae), a new species from Turkey and Estonia based on morphological and molecular data, and a new combination in Clitocella (Entolomataceae). Phytotaxa, 267, 1-15. https://doi.org/10.11646/phytotaxa.267.1.1
  • Vizzini, A., Ferrari, R. J., Ercole, E., & Fellin, A. (2018). A new species of Rhodocybe sect. Rufobrunnea (Entolomataceae, Agaricales) from Italy. MycoKeys, 36, 21-33. https://doi.org/10.3897/mycokeys.36.27094
  • Vizzini, A., Consiglio, G., & Marchetti, M. (2023). Overview of the European species of the genus Clitocella (Entolomataceae, Agaricales) with notes on extralimital taxa. Persoonia-Molecular Phylogeny and Evolution of Fungi, 50(1), 123-157. https://doi.org/10.3767/persoonia.2023.50.04
  • White, T. J., Bruns, T., Lee, S. J. W. T., & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications, 18(1), pp. 315-322.

First Report of Rhodocybe fumanellii (Entolomataceae) from Türkiye with Morphological and Molecular Characterisation

Yıl 2025, Cilt: 28 Sayı: 5, 1197 - 1205

Gülce Ediş , Eda Kumru , İsmail Acar , Halide Karabıyık , Ilgaz Akata

https://doi.org/10.18016/ksutarimdoga.vi.1703181

Öz

This study presents a comprehensive taxonomic assessment of fungal specimens collected from Çanakkale Province in northwestern Türkiye. An integrative approach was employed, combining detailed macro and micromorphological analyses with molecular phylogenetic methods based on the internal transcribed spacer (nrITS,rDNA) region of nuclear ribosomal DNA. The results confirmed the identity of the specimens as Rhodocybe fumanellii R.J. Ferrari, Vizzini & Fellin, representing the first record of this species in Türkiye. As a newly documented member of section Rufobrunnea, this finding broadens the known geographical distribution of the species and contributes to understanding the genus Rhodocybe in the region. The study includes thorough morphological descriptions, ecological data, precise locality information with geographic coordinates, collection details, and photographic documentation, thereby enriching the knowledge of fungal biodiversity in Türkiye.

Anahtar Kelimeler

Rhodocybe fumanelli Türkiye New record Mycobiota

Kaynakça

  • Akata, I. & Erdoğdu, M. (2020). First report of Rutstroemia elatina (Ascomycota) from Turkey. Kahramanmaraş Sütçü İmam University Journal of Agriculture and Nature 23 (2), 391-395. https://doi.org/10.18016/ksutarimdoga.vi.626466
  • Akata, I., Ediş, G., Kumru, E., Acar, İ., & Şahin, E. (2024a). Taxonomic Studies on Rhodocybe asyae Specimens Discovered in a New Location. Kahramanmaraş Sütçü İmam University Journal of Agriculture and Nature 27 (Suppl 1), 124-132. https://doi.org/10.18016/ksutarimdoga.vi.1507554
  • Akata, I., Kumru, E., Sahin, E., Acar, İ., & Kaya, E. (2024b). Amanita vidua: A new record for Turkish Amanita Section Phalloideae based on morphological and molecular data. Trakya University Journal of Natural Sciences, 25(1), 97-110. https://doi.org/10.23902/trkjnat.1446327
  • Akata, I., Ediş, G., Kumru, E., Acar, İ., & Şahin, E. (2024c). Initial Report of Inocybe costinitii in Türkiye with Morphological and Molecular Data. Kahramanmaraş Sütçü İmam University Journal of Agriculture and Nature 27 (6), 1304-1312. https://doi.org/10.18016/ksutarimdoga.vi.1467628
  • Akata, I., Kumru, E., Ediş, G., Acar, İ., & Sahin, E. (2024d). Two Newly Reported Agaricales Species from Türkiye with Morphological and Molecular Data. Kastamonu University Journal of Forestry Faculty, 24(3), 260-280. https://doi.org/10.17475/kastorman.1599952
  • Akata, I., Kumru, E., Ediş, G., Özbey, B. G., Acar, İ., & Sahin, E. (2025). Morphological and Molecular Characterization of Terfezia claveryi and its Distribution in Türkiye. Kahramanmaraş Sütçü İmam University Journal of Agriculture and Nature, 28(3), 843-854. https://doi.org/10.18016/ksutarimdoga.vi.1622161
  • Aplin, N., Cullington, P., Douglas, B., & Janke, E. (2022). DNA barcoding reveals three Rhodocybe species new to Britain. Field Mycology, 23(2), 41-47.
  • Crous, P. W., Wingfield, M. J., Burgess, T. I., Hardy, G., Barber, P. A. Alvarado, P., Barnes, C. W., Buchanan, P. K., Heykoop, M., Moreno, G., Thangavel, R., Van der spuy, S., Barili, A., Barrett, S., Cacciola, S.O., Cano-Lira, J.F., Crane, C., Decock, C., Gibertoni, T.B., Guarro, J., Guevara-Suarez, M., Hubka, V., Kolařík, M., Lira, C.R.S., ...................................... Groenewald, J.Z. (2017). Fungal Planet description sheets: 558–624. Persoonia: Molecular Phylogeny and Evolution of Fungi, 38, 240. https://doi.org/10.3767/003158517X698941
  • Dutta, A. K., Gates, G. M., Rakshit, S., & Acharya, K. (2021). Rhodocybe brunneoaurantiaca (sect. Rufrobrunnea, Entolomataceae): a new species from India. Nordic Journal of Botany, 39(6). https://doi.org/10.1111/njb.03061
  • Kaygusuz, O. (2024). Rhodocybe asanii (Entolomataceae: Agaricales), Türkiye için yeni bir lokalite kaydı. 2nd International Conference on Trends in Advanced Research (ICTAR 2024), Konya, Türkiye, November 22-23, 2024, pp. 707-712.
  • Kluting K. L., Baroni T. J., & Bergemann S. E. (2014). Toward a stable classification of genera within the Entolomataceae: a phylogenetic re-evaluation of the Rhodocybe-Clitopilus clade. Mycologia 106(6), 1127-1142. https://doi.org/10.3852/13-270
  • Lücking, R., Aime, M. C., Robbertse, B., Miller, A. N., Aoki, T. Ariyawansa, H. A., Cardinali, G., Crous, P. W., Druzhinina, I. S., Geiser, D. M., Hawksworth, D. L., Hyde, K. D., Irinyi, L., Jeewon, R., Johnston, P. R., Kirk, P. M., Malosso, E., May, T. W., Meyer, W., Nilsson, H.R., Öpik, M., Robert, V., Stadler, M., Thines, M., Vu, D., Yurkov, A.M., Zhang, N., & Schoch, C.L. (2021). Fungal taxonomy and sequence-based nomenclature. Nature Microbiology, 6(5), 540-548. https://doi.org/10.1038/s41564-021-00888-x
  • Raja, H. A., Miller, A. N., Pearce, C. J., & Oberlies, N. H. (2017). Fungal identification using molecular tools: a primer for the natural products research community. Journal of natural products, 80(3), 756-770. https://doi.org/10.1021/acs.jnatprod.6b01085
  • Reschke, K., Noordeloos, M. E., Manz, C., Hofmann, T. A., Rodríguez-Cedeño, J., Dima, B., & Piepenbring, M. (2022). Fungal diversity in the tropics: Entoloma spp. in Panama. Mycological progress, 21(1), 93-145. https://doi.org/10.1007/s11557-021-01752-2
  • Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, V., Spouge, J. L., Levesque, C. A., Chen, W., Bolchacova, K., ……………………………………….. , D. Schindel, D. 2012. “Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi”, Proceedings of the national academy of Sciences, 109(16), 6241-6246.. https://doi.org/10.1073/pnas.1117018109
  • Schoch, C. L., Robbertse, B., Robert, V., Vu, D., Cardinali, G., Irinyi, L., Meyer, W., Nilsson, R. H., Hughes, K., …………………………………………………….. Federhen, S. (2014). Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi. Database, bau061. https://doi.org/10.1093/database/bau061
  • Sesli, E. (2021). Rhodocybe cistetorum (Basidiomycota, Entolomataceae), a new species from the Colchic ecoregion of Turkey. Nordic Journal of Botany, 39(4). https://doi.org/10.1111/njb.03078
  • Sesli, E. & Vizzini, A. (2017). Two new Rhodocybe species (sect. Rufobrunnea, Entolomataceae) from the east black sea coast of Turkey. Turkish Journal of Botany, 41(2), 200-210. https://doi.org/10.3906/bot-1607-1
  • Silva-Filho, A. G., Baroni, T. J., Komura, D. L., Moncalvo, J. M., Baseia, I. G., & Wartchow, F. (2020). Rhodocybe fusipes (Entolomataceae), a new species from Amazonian ‘terra-firme’forest of Brazil. Sydowia, 72, 163-170. http://doi.org/10.12905/0380.sydowia72-2020-0163
  • Sleiman, S., Bellanger, J. M., Richard, F., & Stephan, J. (2021). First molecular-based contribution to the checklist of Lebanon macrofungi. Mycotaxon, 136(3), 687-687. https://doi.org/10.5248/136.687
  • Sun, Y. L. & Bau, T. (2023). Rhodocybe subasyae, a new species of Rhodocybe sect. Rufobrunnea (Entolomataceae, Agaricales) from northeast China. Mycoscience, 64(3), 96-100. https://doi.org/10.47371/mycosci.2023.03.001
  • Tamura, K. (1992). Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases. Molecular Biology and Evolution, 9(4), 678-687. https://doi.org/10.1093/oxfordjournals.molbev.a040752
  • Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution, 38(7), 3022-3027. https://doi.org/10.1093/molbev/msab120
  • Vizzini, A., Baroni T. J., Sesli, E., Antonín, V., & Saar, I. (2016). Rhodocybe tugrulii (Agaricales, Entolomataceae), a new species from Turkey and Estonia based on morphological and molecular data, and a new combination in Clitocella (Entolomataceae). Phytotaxa, 267, 1-15. https://doi.org/10.11646/phytotaxa.267.1.1
  • Vizzini, A., Ferrari, R. J., Ercole, E., & Fellin, A. (2018). A new species of Rhodocybe sect. Rufobrunnea (Entolomataceae, Agaricales) from Italy. MycoKeys, 36, 21-33. https://doi.org/10.3897/mycokeys.36.27094
  • Vizzini, A., Consiglio, G., & Marchetti, M. (2023). Overview of the European species of the genus Clitocella (Entolomataceae, Agaricales) with notes on extralimital taxa. Persoonia-Molecular Phylogeny and Evolution of Fungi, 50(1), 123-157. https://doi.org/10.3767/persoonia.2023.50.04
  • White, T. J., Bruns, T., Lee, S. J. W. T., & Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications, 18(1), pp. 315-322.
Toplam 27 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Bitki Bilimi (Diğer)
Bölüm ARAŞTIRMA MAKALESİ (Research Article)
Yazarlar

Gülce Ediş 0000-0001-7038-9865

Eda Kumru 0009-0000-7417-6197

İsmail Acar 0000-0002-6049-4896

Halide Karabıyık 0000-0002-1778-2200

Ilgaz Akata 0000-0002-1731-1302

Erken Görünüm Tarihi 25 Temmuz 2025
Yayımlanma Tarihi
Gönderilme Tarihi 21 Mayıs 2025
Kabul Tarihi 9 Temmuz 2025
Yayımlandığı Sayı Yıl 2025Cilt: 28 Sayı: 5

Kaynak Göster

APA Ediş, G., Kumru, E., Acar, İ., Karabıyık, H., vd. (2025). First Report of Rhodocybe fumanellii (Entolomataceae) from Türkiye with Morphological and Molecular Characterisation. Kahramanmaraş Sütçü İmam Üniversitesi Tarım Ve Doğa Dergisi, 28(5), 1197-1205. https://doi.org/10.18016/ksutarimdoga.vi.1703181
 Kapak Resmi İndir

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