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Tokat Yöresinden Toplanan Cortinarius rufo-olivaceus (Pers.) Fr. (subgenus Phlegmacium sect. Calochroi) Türünün Morfolojik ve Moleküler Filogenisi

Year 2020, Volume: 23 Issue: 3, 600 - 605, 30.06.2020

Meryem Şenay Şengül Demirak , Hakan Işık , İbrahim Türkekul

https://doi.org/10.18016/ksutarimdoga.vi.671275
Cited By: 3

Abstract

Cortinarius (Pers.) Gray örnekleri Tokat ilinden meşe ormanlarında toplanmıştır. Makro ve mikromorfolojik özellikler ile nükleer ribozomal iç aralayıcı bölge (ITS) ve ribozomal en büyük alt birim (LSU) gen bölgelerine karşılık gelen DNA dizileri ile moleküler filogenetik analizler, çalışılan numunenin Cortinarius rufo-olivaceus (Pers.) Fr. türü olduğunu göstermiştir. Bu çalışma, Türkiye’de C. rufo-olivaceus’un mikroskobik ve makroskobik morfolojik tanımı ve moleküler filogenetik analizini belirleyen ilk çalışmadır.

Keywords

Cortinarius Makrofungus Yeni lokalite ITS LSU

Project Number

BAP project No: 2019/87

References

  • Akata I, Kabaktepe S, Akgül H 2015. Cortinarius caperatus (Pers.) Fr., a new record for Turkish mycobiota. Kastamonu University Journal of Forestry Faculty 15: 86-89.
  • Bon M 1987. The Mushrooms and Toadstools of Britain and North-Western Europe. Hodder-Stoughton, London, 352 p.
  • Breitenbach J, Kränzlin F 2000. Fungi of Switzerland. Vol.5, Verlag Mykologia, Lucerne, Switzerland.
  • Frøslev TG, Jeppesen TS, Læssøe T, Kjøller R 2007. Molecular phylogenetics and delimitation of species in Cortinarius section Calochroi (Basidiomycota, Agaricales) in Europe. Molecular phylogenetics and evolution 44(1): 217-227.
  • Garnica S, Weiß M, Oertel B, Ammirati J, Oberwinkler F 2009. Phylogenetic relationships in Cortinarius, section Calochroi, inferred from nuclear DNA sequences. BMC Evolutionary Biology 9(1): 1.
  • Garrido-Benavent I, Ballarà J, Mahiques R 2015. New insights into subg. Phlegmacium sect. Calochroi: adding morphological and molecular data from Mediterranean representatives, with special regard to Cortinarius prasinus, C. natalis and C. murellensis species complexes. Journal des J.E.C., 17:38-78.
  • Işıloğlu M, Öder N 1995. Contributions to the macrofungi of Mediterranean Turkey. Turkish Journal of Botany, 19: 603-609.
  • Itoo ZA, Reshi ZA, Basharat Q, Majeed ST, Andrabi KI 2015. Identification and characterization of Ectomycorrhizal Cortinarius species (Agaricales, Basidiomycetes) from temperate Kashmir Himalaya, India, by ITS barcoding. Advances in Molecular Biology 2015: 1-9.
  • Kalmer A, Acar İ, Dizkırıcı Tekpınar A 2019. Phylogenetic and taxonomic studies on Cortinarius caerulescens (Schaeff.) Fr. a new record for Turkish mycota. The Journal of Fungus 10(1): 8-16.
  • Kirk P 2011. Index Fungorum. URL: http://www.indexfungorum.org (accessed 27.12.2019).
  • Kumar S, Stecher G, Tamura K 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular biology and evolution 33(7): 1870-1874.
  • Mazza G 2019. Monaco Nature Encyclopedia. Retrieved in December, 21, 2019 from https://www.monaconatureencyclopedia.com/cortinarius-rufoolivaceus/?lang=en
  • Moser M 1983. Keys to Agarics and Boleti. Gustav Fischer Verlag, Stuttgart, 535 p.
  • Ortega A, Suárez-Santiago VN, Reyes JD 2008. Morphological and ITS identification of Cortinarius species (section Calochroi) collected in Mediterranean Quercus woodlands. Fungal Diversity, 29: 73-88.
  • Orton PD 1955. The genus Cortinarius I. Myxacium and Phlegmacium. The Naturalist. 1-80, London, UK.
  • Phillips R 1981. Mushrooms and Other Fungi of Great Britain & Europe. Pan Books Ltd., London, 288p
  • Sesli E, Denchev CM 2014. Checklists of the myxomycetes, larger ascomycetes, and larger basidiomycetes in Turkey. 6 th. Mycotaxon Checklists Online: 1-136.
  • Sesli E, Contu M, Jordi VI, Moreau PA, Battistin E 2015. Taxonomic studies on some agaricoid and boletoid fungi of Turkey. Turkish Journal of Botany 39(1): 134-146.
  • Sesli E, Türkekul İ, Akata I, Niskanen T 2016. New records of Basidiomycota from Trabzon, Tokat, and İstanbul provinces in Turkey. Turkish Journal of Botany 40(5): 531-545.
  • Sesli E 2018. Cortinarius ve Lyophyllum cinslerine ait yeni kayıtlar. Mantar dergisi 9(1): 18-23.
  • Sesli E, Liimatainen K 2018. Cortinarius conicoumbonatus (Cortinarius subgen. Telamonia sect. Hinnulei): a new species from spruce-beech forests of the East Black Sea Region of Turkey. Turkish Journal of Botany 42(3): 327-334.
  • Stensrud Ø, Orr RJS, Røberg KR, Schumacher T, Høiland K 2014. Phylogenetic relationships in Cortinarius with focus on North European species. Karstenia, 54: 57-71.
  • Tamura K, Nei M 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular biology and evolution 10(3): 512-526.
  • Vilgalys R, Hester M 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172(8): 4238-4246.
  • White TJ, Bruns T, Lee SJ, Taylor J 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. New York, NY, USA: Academic Press, pp. 315-322.

Morphological and Molecular Phylogeny of Cortinarius rufo-olivaceus (Pers.) Fr. (subgenus Phlegmacium sect. Calochroi) Collected from Tokat Region

Year 2020, Volume: 23 Issue: 3, 600 - 605, 30.06.2020

Meryem Şenay Şengül Demirak , Hakan Işık , İbrahim Türkekul

https://doi.org/10.18016/ksutarimdoga.vi.671275
Cited By: 3

Abstract

Cortinarius (Pers.) Gray samples were collected in the oak forests from Tokat province. Macro and micromorphological features as well as molecular phylogenetic analyses according to the DNA sequences corresponding to internal transcribed spacer region (ITS) and the large subunit (LSU) of nuclear ribosomal RNA gene regions indicated that the studied specimen is a Cortinarius rufo-olivaceus (Pers.) Fr. This study determined the first microscopic and macroscopic morphological description and molecular phylogenetic analysis of the Cortinarius rufo-olivaceus (Pers.) Fr. in Turkey.

Keywords

Cortinarius Macrofungi New locality ITS LSU

Supporting Institution

Tokat Gaziosmanpaşa University Scientific Research Project Foundation

Project Number

BAP project No: 2019/87

Thanks

This study was supported by Tokat Gaziosmanpaşa University Scientific Research Project Foundation (BAP project No: 2019/87).

References

  • Akata I, Kabaktepe S, Akgül H 2015. Cortinarius caperatus (Pers.) Fr., a new record for Turkish mycobiota. Kastamonu University Journal of Forestry Faculty 15: 86-89.
  • Bon M 1987. The Mushrooms and Toadstools of Britain and North-Western Europe. Hodder-Stoughton, London, 352 p.
  • Breitenbach J, Kränzlin F 2000. Fungi of Switzerland. Vol.5, Verlag Mykologia, Lucerne, Switzerland.
  • Frøslev TG, Jeppesen TS, Læssøe T, Kjøller R 2007. Molecular phylogenetics and delimitation of species in Cortinarius section Calochroi (Basidiomycota, Agaricales) in Europe. Molecular phylogenetics and evolution 44(1): 217-227.
  • Garnica S, Weiß M, Oertel B, Ammirati J, Oberwinkler F 2009. Phylogenetic relationships in Cortinarius, section Calochroi, inferred from nuclear DNA sequences. BMC Evolutionary Biology 9(1): 1.
  • Garrido-Benavent I, Ballarà J, Mahiques R 2015. New insights into subg. Phlegmacium sect. Calochroi: adding morphological and molecular data from Mediterranean representatives, with special regard to Cortinarius prasinus, C. natalis and C. murellensis species complexes. Journal des J.E.C., 17:38-78.
  • Işıloğlu M, Öder N 1995. Contributions to the macrofungi of Mediterranean Turkey. Turkish Journal of Botany, 19: 603-609.
  • Itoo ZA, Reshi ZA, Basharat Q, Majeed ST, Andrabi KI 2015. Identification and characterization of Ectomycorrhizal Cortinarius species (Agaricales, Basidiomycetes) from temperate Kashmir Himalaya, India, by ITS barcoding. Advances in Molecular Biology 2015: 1-9.
  • Kalmer A, Acar İ, Dizkırıcı Tekpınar A 2019. Phylogenetic and taxonomic studies on Cortinarius caerulescens (Schaeff.) Fr. a new record for Turkish mycota. The Journal of Fungus 10(1): 8-16.
  • Kirk P 2011. Index Fungorum. URL: http://www.indexfungorum.org (accessed 27.12.2019).
  • Kumar S, Stecher G, Tamura K 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular biology and evolution 33(7): 1870-1874.
  • Mazza G 2019. Monaco Nature Encyclopedia. Retrieved in December, 21, 2019 from https://www.monaconatureencyclopedia.com/cortinarius-rufoolivaceus/?lang=en
  • Moser M 1983. Keys to Agarics and Boleti. Gustav Fischer Verlag, Stuttgart, 535 p.
  • Ortega A, Suárez-Santiago VN, Reyes JD 2008. Morphological and ITS identification of Cortinarius species (section Calochroi) collected in Mediterranean Quercus woodlands. Fungal Diversity, 29: 73-88.
  • Orton PD 1955. The genus Cortinarius I. Myxacium and Phlegmacium. The Naturalist. 1-80, London, UK.
  • Phillips R 1981. Mushrooms and Other Fungi of Great Britain & Europe. Pan Books Ltd., London, 288p
  • Sesli E, Denchev CM 2014. Checklists of the myxomycetes, larger ascomycetes, and larger basidiomycetes in Turkey. 6 th. Mycotaxon Checklists Online: 1-136.
  • Sesli E, Contu M, Jordi VI, Moreau PA, Battistin E 2015. Taxonomic studies on some agaricoid and boletoid fungi of Turkey. Turkish Journal of Botany 39(1): 134-146.
  • Sesli E, Türkekul İ, Akata I, Niskanen T 2016. New records of Basidiomycota from Trabzon, Tokat, and İstanbul provinces in Turkey. Turkish Journal of Botany 40(5): 531-545.
  • Sesli E 2018. Cortinarius ve Lyophyllum cinslerine ait yeni kayıtlar. Mantar dergisi 9(1): 18-23.
  • Sesli E, Liimatainen K 2018. Cortinarius conicoumbonatus (Cortinarius subgen. Telamonia sect. Hinnulei): a new species from spruce-beech forests of the East Black Sea Region of Turkey. Turkish Journal of Botany 42(3): 327-334.
  • Stensrud Ø, Orr RJS, Røberg KR, Schumacher T, Høiland K 2014. Phylogenetic relationships in Cortinarius with focus on North European species. Karstenia, 54: 57-71.
  • Tamura K, Nei M 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular biology and evolution 10(3): 512-526.
  • Vilgalys R, Hester M 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172(8): 4238-4246.
  • White TJ, Bruns T, Lee SJ, Taylor J 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. New York, NY, USA: Academic Press, pp. 315-322.
There are 25 citations in total.

Details

Primary Language English
Subjects Structural Biology
Journal Section RESEARCH ARTICLE
Authors

Meryem Şenay Şengül Demirak 0000-0003-4879-1908

Hakan Işık 0000-0001-8241-0078

İbrahim Türkekul 0000-0002-1036-9835

Project Number BAP project No: 2019/87
Publication Date June 30, 2020
Submission Date January 6, 2020
Acceptance Date February 20, 2020
Published in Issue Year 2020 Volume: 23 Issue: 3

Cite

APA Şengül Demirak, M. Ş., Işık, H., & Türkekul, İ. (2020). Morphological and Molecular Phylogeny of Cortinarius rufo-olivaceus (Pers.) Fr. (subgenus Phlegmacium sect. Calochroi) Collected from Tokat Region. Kahramanmaraş Sütçü İmam Üniversitesi Tarım Ve Doğa Dergisi, 23(3), 600-605. https://doi.org/10.18016/ksutarimdoga.vi.671275

Cited By

Molecular and morphological investigation of Cortinarius bulliardii from Tokat (Turkey)
Journal of New Results in Science
https://doi.org/10.54187/jnrs.970325
Cortinarius hinnuleus (Basidiomycota): Türkiye Mikotası İçin Yeni Bir Kayıt
Afyon Kocatepe University Journal of Sciences and Engineering
https://doi.org/10.35414/akufemubid.1246897
The First Identification of a Rare Fungus Calonarius fulvocitrinus (Cortinariaceae, Agaricales) from Quercus forests of the Black Sea Region of Türkiye
Kahramanmaraş Sütçü İmam Üniversitesi Tarım ve Doğa Dergisi
https://doi.org/10.18016/ksutarimdoga.vi.1658925
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